Basestack
latest
  • Installation
    • Windows
      • Docker
        • Docker Download + Install
        • Confirm Docker is Running
      • Basestack
        • Install Main
    • MacOS
      • Docker
        • Instructions
      • Basestack
    • Linux
      • Docker
        • Instructions
      • Basestack
        • Install Main
    • Troubleshooting
      • General
      • Windows
      • Hyper-V Not Enabled - Windows
      • Enable Hyper-V in Basestack
      • Enable Hyper-V in Windows System
      • WSL2 Not Installed - Windows
      • Install WSL2 from External Sources
      • Install WSL2 in Basestack
      • Switching between HyperV and WSL2 instance
      • WSL2 error on Docker Start
      • Virtualization Disabled - Windows
      • Operation not permitted - Windows
      • Operation not permitted error
      • Uninstall Basestack
      • Docker Pipelines Do Not Run With External Drives
      • I/O timeout
      • Docker Connection
      • ‘You are not allowed to use Docker, you must be in the “docker-users” group’ - Windows
      • Linux
        • Permisson denied (Linux)
    • Uninstall
      • Uninstall
        • Docker Image(s):
        • Basestack
        • Windows
        • Mac
        • Linux
        • User Data
  • Usage
    • Modules
      • Pavian
        • Parameters
        • Returns
      • NCBI Scrubber
        • Parameters
        • Returns
      • Mytax
        • Parameters
        • Returns
        • WIP Procedures
        • Display
      • Mytax version 2 (Metagenomics)
        • Parameters
        • Returns
        • Display
      • Basestack Consensus
        • Parameters
        • Returns
      • Nextstrain
      • IGV
      • GAMMA
        • Parameters
        • Returns
      • Rampart
        • Parameters
        • Returns
      • FastQC
        • Parameters
        • Returns
      • NanoPlot
        • Parameters
        • Returns
      • Viral Recon
        • Parameters
        • Returns
      • Bamstats
        • Parameters
        • Returns
      • Artic Field Bioinformatics
        • Medaka
        • Nanopolish
      • IVAR
        • Parameters
        • Returns
      • Minimap2
        • Parameters
        • Returns
      • Pangolin
        • Parameters
        • Returns
      • MASH
        • Parameters
        • Returns
      • VADR
        • Parameters
        • Returns
      • Samtools (Under Construction)
      • Unicycler
        • Unicycler Long Reads
        • Unicycler Short Reads
      • TaxTriage (Metagenomics) (Under Construction)
        • Parameters
        • Returns
    • Supplemental
      • Guppy Minknow
        • MinKNOW
        • CUDA
        • Barcoding Kits Missing
        • Guppy GPU Basecaller
        • Reduce Runners if GPU basecalling fails
        • Running Command-line GPU Basecalling
        • Reinstalling MinKNOW
      • Supplemental
      • NVIDIA Jetson Setup
      • Special Mentions
  • API
    • Development Setup of Server and App
    • Components
      • Modules
        • ping POST
        • getAllCatalog GET
        • getInstalledCatalog GET
        • moduleBuildDependency POST
        • moduleBuild POST
      • Procedures
        • getProcedures GET
        • runProcedure POST
        • cancelProcedure POST
      • Jobs
        • getJob GET
        • startJob POST
        • cancelJob POST
        • setJob POST
      • System
        • Pinging the Server GET
        • getServerLogs GET
Basestack
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