Pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
Parameters
FASTA file: file
Genome file, can be a multi-sequence FASTA file
AutoUpdate: option
Note
Pangolin updates so frequently, opt to check for updates before running. Requires Internet access
Returns
Pangolin Lineage Report: comma-delimited file
alignment FASTA: sequences.aln.fasta, contains your alignment from pangolin