Pangolin

Pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

Parameters

  • FASTA file: file

    Genome file, can be a multi-sequence FASTA file

  • AutoUpdate: option

Note

Pangolin updates so frequently, opt to check for updates before running. Requires Internet access

Returns

  1. Pangolin Lineage Report: comma-delimited file

  2. alignment FASTA: sequences.aln.fasta, contains your alignment from pangolin

_images/pangolin.png _images/pangolin2.png