Pavian

Pavian is a tool designed to analyze report files from a variety of classification modules, namely, for Basestack, Mytax uses Kraken2

Note

This module contains a UI to be displayed from the rendering button in the variables table

Parameters

report fileFile

Report file from Kraken2 run. See here. To be input INSIDE the running visualization. See images below

Returns

Pavian VisualizationUser interface

The tool simply requires you to input your kraken.report (from mytax or otherwise) into the home-page.

_images/pavian_start.png

Select Sample in the left-hand navigation drawer to view diagrams and information of your report

_images/sankey_pavian.png