NCBI Scrubber

Note

Only works on interleaved R1/R2 fastq file OR NanoPore reads.

NCBI scubber removes human reads from sequencing data

Parameters

inputFile

Your input fastq file. Can be compressed but you must check “decompressed” if so

interleavedBoolean

Is the file interleaved? (TRUE/FALSE, Illumina)

decompressed: Boolean

Check if your file is compressed. You can decompress it directly in the UI here to the name: decompressed.fastq in the same path as the input file

Returns

Filtered File.filtered.fastq

removed of human reads