NanoPlot

NanoPlot is a tool designed to view the quality and do control on raw sequencing data from long-read runs

Note

This module outputs an html file that is a report of your raw sequencing data

Parameters

• input file: file

  Can be one of these list:

  1. fastq file [file …]

     Data is in one or more default fastq file(s).

  2. fasta file [file …]

     Data is in one or more default fasta file(s).

  3. fastq_rich file [file …]

     Data is in one or more fastq file(s) generated by albacore or MinKNOW with additional information concerning channel and time.

  4. fastq_minimal file [file …]

     Data is in one or more fastq file(s) generated by albacore or MinKNOW with additional information concerning channel and time. Minimal data is extracted swiftly without elaborate checks.

  5. summary file [file …]

     Data is in one or more summary file(s) generated by albacore or guppy.

  6. bam file [file …]

     Data is in one or more sorted bam file(s).

Note

Input information taken from the --help output of NanoPlot

• barcoding file: optional - file

  Must only be given when using the summary file option

Returns

Report file : HTML file