Bamstats

Bamstats is a tool designed compute mapping stats from a BAM file, often output from alignment methods

Note

This module outputs a zipped folder that contains your necessary information

Parameters

• input BAM: file

  This is often output from alignment methods like bwa, bowtie2, or minimap2. Additionally, you can receive BAM files from modules within Basestack such as:

  1. Basestack Consensus

  2. Medaka

  3. Nanopolish

Returns

Bamstats Report zipped : bamstats_report.zip, HTML-containing directory