Basestack

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Installation
Usage
- Modules
  - Pavian
    - Parameters
    - Returns
  - NCBI Scrubber
    - Parameters
    - Returns
  - Mytax
  - Mytax version 2 (Metagenomics)
  - Basestack Consensus
    - Parameters
    - Returns
  - Nextstrain
  - IGV
  - GAMMA
    - Parameters
    - Returns
  - Rampart
    - Parameters
    - Returns
  - FastQC
    - Parameters
    - Returns
  - NanoPlot
    - Parameters
    - Returns
  - Viral Recon
    - Parameters
    - Returns
  - Bamstats
    - Parameters
    - Returns
  - Artic Field Bioinformatics
    - Medaka
    - Nanopolish
  - IVAR
    - Parameters
    - Returns
  - Minimap2
    - Parameters
    - Returns
  - Pangolin
    - Parameters
    - Returns
  - MASH
    - Parameters
    - Returns
  - VADR
    - Parameters
    - Returns
  - Samtools (Under Construction)
  - Unicycler
    - Unicycler Long Reads
    - Unicycler Short Reads
  - TaxTriage (Metagenomics) (Under Construction)
    - Parameters
    - Returns
- Supplemental
API
- Development Setup of Server and App
- Components

Basestack

Usage
Samtools (Under Construction)
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Samtools (Under Construction)

Warning

Under Construction

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